species:   Rhsol
pid:       PID0562
parent:    Rhi-milR-100
paralog:   
locus:     KB318038.1:806-883
matures:   ['UAAUUGUUUGUACUCAGUGGC', 'UAACUGCUACUGUCAUGAC']
srr:       SRR1994875
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram KB318038.1:806-883

34 out of bounds
24 alignments
9 proper strand
9 stranded perfect matches

       ************************                  **********************       
CUUAAGGGGUUAAUUGUUUGUACUCAGUGGCCACAAGCACCAGCUACUGGCUAACUGCUACUGUCAUGACCCACUCCA
....((((((((..((...(((..(((((((((..(((....)))..))))).)))).)))...)))))))).))...
----------UAAUUGUUUGUACUCAGUGGC----------------------------------------------- l=21 a=0 c
---------------------------------------------------UAACUGCUACUGUCAUGAC-------- l=19 a=1 c*
---------UUAAUUGUUUGUACUCAGUGGC----------------------------------------------- l=22 a=5 ma
---------------------------------------------------UAACUGCUACUGUCAUGACC------- l=20 a=1 ma*

---------------------------------------------------UAACUGCUACUGUCAUGAC-------- l=19 a=1 (c*)
---------------------------------------------------UAACUGCUACUGUCAUGACC------- l=20 a=1 (ma*)
---------------------------------------------------UAACUGCUACUGUCAUGACCC------ l=21 a=1 
----------------UUUGUACUCAGUGGCCACAAGC---------------------------------------- l=22 a=1 
---------UUAAUUGUUUGUACUCAGUGGC----------------------------------------------- l=22 a=5 (ma)

mb-01111
ax-1101011
ku-01
ss-111110001101
fn-101
